The sources of JonDo/JAP are available in a subversion repository.
You can browse the sources online at http://anon.inf.tu-dresden.de/develop/doc/jap/
You can download the sources by:
svn checkout https://subversion.inf.tu-dresden.de/svn/Jap/Jap
A Java-JDK (Sun-Java6 or OpenJDK6) and the tools ant and maven2 are needed to create JonDo/JAP.
cd JAP/trunk mvn package
All required Java libraries will be downloaded and compiled by the build tool maven2. After a successful build process, you will find the JAR files with and without dependencies in the subdirectory target/.